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Two Sample MR functions and interface to MR Base database
Installation. To install the latest version of TwoSampleMR, perform as normal: install.packages ("devtools") devtools::install_github ("MRCIEU/TwoSampleMR") To update the package just run the install_github ("MRCIEU/TwoSampleMR") command again.
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IEU OpenGWAS project
See the API page for fast programmatic options to query the data, including R, python and HPC environments.
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About - IEU OpenGWAS project
Background. Developed at the MRC Integrative Epidemiology Unit (IEU) at the University of Bristol, this resource is a manually curated collection of complete GWAS summary datasets made available as open source files for download, or by querying a database of the complete data.. This project began as the underlying database for the MR-Base and LD Hub projects.
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MRC Integrative Epidemiology Unit · GitHub
MRC Integrative Epidemiology Unit has 73 repositories available. Follow their code on GitHub.
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Using AscRtain - MRC IEU
Development This app highlights some of the functionality of the R Package AscRtain developed by Gibran Hemani and Tom Palmer. This RShiny app was created by Gareth Griffith as a pedagogical supplement to the MedRxiv preprint 'Collider bias undermines our understanding of COVID-19 disease risk and severity.' written with colleagues at the MRC-IEU, 2020.
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Introduction • TwoSampleMR
library (devtools) install_github ("MRCIEU/TwoSampleMR") If you don’t have the devtools package install it from CRAN using install.packages("devtools"). Overview. The workflow for performing MR is as follows: Select instruments for the exposure (perform LD clumping if necessary)
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GitHub - MRCIEU/TwoSampleMR: R package for performing 2 ...
install.packages("devtools") devtools::install_github("MRCIEU/TwoSampleMR") To update the package just run the install_github("MRCIEU/TwoSampleMR") command again. We recommend using this new version going forwards but for a limited time we are enabling backwards compatibility, in case you are in the middle of analysis or need to reproduce old analysis.
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